| Game Date | Conference | Road Team | Score | Home Team | Score | Status | Box Score | Recap | Commentary | |
|---|---|---|---|---|---|---|---|---|---|---|
| National Collegiate Baseball Writers Poll | ||||||||||
| 4/13/2009 | Loyola Marymount | 4 | at | #7 UC Irvine | 6 | FINAL | Box Score | Recap | ||
| 4/13/2009 | Texas Tech | 5 | at | #21 TCU | 12 | FINAL | Box Score | Recap | ||
| 4/13/2009 | BYU | 6 | at | #25 Oregon State | 7 | FINAL | Box Score | Recap | ||
| America East Conference | ||||||||||
| 4/13/2009 | * | Maine | 14 | at | Hartford | 1 | FINAL | Box Score | Recap | 7 innings (makeup of 4/11 game) |
| 4/13/2009 | * | Maine | 14 | at | Hartford | 3 | FINAL | Box Score | Recap | makeup of 4/11 game |
| Atlantic 10 Conference | ||||||||||
| 4/13/2009 | Northeastern | 5 | vs | Massachusetts | 3 | FINAL | Box Score | Recap | Beanpot Tournament, Boston, MA | |
| Atlantic Coast Conference | ||||||||||
| 4/13/2009 | Harvard | 5 | vs | Boston College | 9 | FINAL | Box Score | Recap | Beanpot Tournament, Boston, MA | |
| Big 12 Conference | ||||||||||
| 4/13/2009 | Texas Tech | 5 | at | #21 TCU | 12 | FINAL | Box Score | Recap | ||
| Big East Conference | ||||||||||
| 4/13/2009 | UMES | 4 | at | West Virginia | 5 | FINAL | Box Score | Recap | ||
| Big South Conference | ||||||||||
| 4/13/2009 | Charleston Southern | at | The Citadel | Canceled | Recap | CCD, rain | ||||
| Big West Conference | ||||||||||
| 4/13/2009 | Loyola Marymount | 4 | at | #7 UC Irvine | 6 | FINAL | Box Score | Recap | ||
| 4/13/2009 | Long Beach State | 5 | at | Pepperdine | 4 | FINAL | Box Score | Recap | ||
| Colonial Athletic Association | ||||||||||
| 4/13/2009 | Northeastern | 5 | vs | Massachusetts | 3 | FINAL | Box Score | Recap | Beanpot Tournament, Boston, MA | |
| Conference USA | ||||||||||
| 4/13/2009 | Alabama | 10 | at | UAB | 6 | FINAL | Box Score | Recap | resumption of 3/25 game | |
| Division I Independents | ||||||||||
| 4/13/2009 | Dallas Baptist | 3 | at | UTSA | 4 | FINAL | Box Score | Recap | ||
| 4/13/2009 | Edward Waters | 3 | at | Savannah State | 4 | FINAL | Box Score | 8 innings, rain | ||
| 4/13/2009 | Houston Baptist | 0 | at | Texas State | 4 | FINAL | Box Score | Recap | ||
| 4/13/2009 | North Carolina Central | 12 | at | Coppin State | 7 | FINAL | Box Score | Recap | 11 innings | |
| Horizon League | ||||||||||
| 4/13/2009 | Grace | 0 | at | Valparaiso | 12 | FINAL | Box Score | Recap | 7 innings | |
| Ivy League | ||||||||||
| 4/13/2009 | * | Columbia | 2 | at | Princeton | 3 | FINAL | Box Score | Recap | 7 innings (makeup of 4/11 game) |
| 4/13/2009 | * | Columbia | 3 | at | Princeton | 5 | FINAL | Box Score | Recap | makeup of 4/11 game |
| 4/13/2009 | Harvard | 5 | vs | Boston College | 9 | FINAL | Box Score | Recap | Beanpot Tournament, Boston, MA | |
| Metro Atlantic Athletic Conference | ||||||||||
| 4/13/2009 | * | Canisius | 20 | at | Iona | 2 | FINAL | Box Score | Recap | makeup of 4/11 game |
| 4/13/2009 | * | Rider | 2 | at | Marist | 4 | FINAL | Box Score | Recap | |
| 4/13/2009 | * | St. Peter's | 0 | at | Fairfield | 3 | FINAL | Box Score | Recap | makeup of 4/11 game |
| 4/13/2009 | * | St. Peter's | 0 | at | Fairfield | 1 | FINAL | Box Score | Recap | 8 innings |
| Mid-Eastern Athletic Conference | ||||||||||
| 4/13/2009 | Norfolk State | 13 | at | Coppin State | 2 | FINAL | Box Score | Recap | 7 innings | |
| 4/13/2009 | North Carolina Central | 12 | at | Coppin State | 7 | FINAL | Box Score | Recap | 11 innings | |
| 4/13/2009 | UMES | 4 | at | West Virginia | 5 | FINAL | Box Score | Recap | ||
| Mountain West Conference | ||||||||||
| 4/13/2009 | Texas Tech | 5 | at | #21 TCU | 12 | FINAL | Box Score | Recap | ||
| 4/13/2009 | BYU | 6 | at | #25 Oregon State | 7 | FINAL | Box Score | Recap | ||
| Pac 10 Conference | ||||||||||
| 4/13/2009 | BYU | 6 | at | #25 Oregon State | 7 | FINAL | Box Score | Recap | ||
| 4/13/2009 | California | 4 | at | Stanford | 14 | FINAL | Box Score | Recap | ||
| Patriot League | ||||||||||
| 4/13/2009 | * | Bucknell | 10 | at | Holy Cross | 5 | FINAL | Box Score | Recap | 7 innings (makeup of 4/11 game) |
| 4/13/2009 | * | Bucknell | 7 | at | Holy Cross | 11 | FINAL | Box Score | Recap | makeup of 4/11 game |
| 4/13/2009 | * | Lehigh | 8 | at | Lafayette | 9 | FINAL | Box Score | Recap | makeup of 4/11 game |
| 4/13/2009 | * | Navy | 5 | at | Army | 11 | FINAL | Box Score | Recap | 7 innings (makeup of 4/11 game) |
| 4/13/2009 | * | Navy | 12 | at | Army | 10 | FINAL | Box Score | Recap | makeup of 4/11 game |
| Southeastern Conference | ||||||||||
| 4/13/2009 | Alabama | 10 | at | UAB | 6 | FINAL | Box Score | Recap | resumption of 3/25 game | |
| Southern Conference | ||||||||||
| 4/13/2009 | Charleston Southern | at | The Citadel | Canceled | Recap | CCD, rain | ||||
| Southland Conference | ||||||||||
| 4/13/2009 | Dallas Baptist | 3 | at | UTSA | 4 | FINAL | Box Score | Recap | ||
| 4/13/2009 | Houston Baptist | 0 | at | Texas State | 4 | FINAL | Box Score | Recap | ||
| West Coast Conference | ||||||||||
| 4/13/2009 | Loyola Marymount | 4 | at | #7 UC Irvine | 6 | FINAL | Box Score | Recap | ||
| 4/13/2009 | Long Beach State | 5 | at | Pepperdine | 4 | FINAL | Box Score | Recap | ||
| Western Athletic Conference | ||||||||||
| 4/13/2009 | * | New Mexico State | 10 | at | Fresno State | 6 | FINAL | Box Score | Recap | |
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